Equilibrium Clusters in Concentrated Lysozyme Protein Solutions

We have studied the structure of salt-free lysozyme at 293 K and pH 7.8 using molecular simulations and experimental SAXS effective potentials between proteins at three volume fractions, 0.012, 0.033, and 0.12. We found that the structure of lysozyme near physiological conditions strongly depends on the volume fraction of proteins. The studied lysozyme solutions are dominated by monomers only for <0.012; for the strong dilution 70% of proteins are in a form of monomers. For 0.033 only 20% of proteins do not belong to a cluster. The clusters are mainly elongated. For 0.12 almost no individual particles exits, and branched, irregular clusters of large extent appear. Our simulation study provides new insight into the formation of equilibrium clusters in charged protein solutions near physiological conditions

The conic-gearing image of a complex number and a spinor-born surface geometry

Quaternion (Q-) mathematics formally contains many fragments of physical laws; in particular, the Hamiltonian for the Pauli equation automatically emerges in a space with Q-metric. The eigenfunction method shows that any Q-unit has an interior structure consisting of spinor functions; this helps us to represent any complex number in an orthogonal form associated with a novel geometric image (the conic-gearing picture). Fundamental Q-unit-spinor relations are found, revealing the geometric meaning of spinors as Lam\'e coefficients (dyads) locally coupling the base and tangent surfaces.Comment: 7 pages, 1 figur

Toward equilibrium ground state of charge density waves in rare-earth tritellurides

We show that the charge density wave (CDW) ground state below the Peierls transition temperature, $T_{CDW}$, of rare-earth tritellurides is not at its equilibrium value, but depends on the time where the system was kept at a fixed temperature below $T_{CDW}$. This ergodicity breaking is revealed by the increase of the threshold electric field for CDW sliding which depends exponentially on time. We tentatively explain this behavior by the reorganization of the oligomeric (Te$_x$)$^{2-}$ sequence forming the CDW modulation.Comment: 10 pages, 5 figures, accepted in PR

Covariant theory of particle-vibrational coupling and its effect on the single-particle spectrum

The Relativistic Mean Field (RMF) approach describing the motion of independent particles in effective meson fields is extended by a microscopic theory of particle vibrational coupling. It leads to an energy dependence of the relativistic mass operator in the Dyson equation for the single-particle propagator. This equation is solved in the shell-model of Dirac states. As a result of the dynamics of particle-vibrational coupling we observe a noticeable increase of the level density near the Fermi surface. The shifts of the single-particle levels in the odd nuclei surrounding 208-Pb and the corresponding distributions of the single-particle strength are discussed and compared with experimental data.Comment: 27 pages, 8 figure

Cooper Pairs with Broken Parity and Time-Reversal Symmetries in D-wave Superconductors

Paramagnetic effects are shown to result in the appearance of a triplet component of order parameter in a vortex phase of a d-wave superconductor in the absence of impurities. This component, which breaks both parity and time-reversal symmetries of Cooper pairs, is expected to be of the order of unity in a number of modern superconductors such as organic, high-Tc, and some others. A generic phase diagram of such type-IV superconductors, which are singlet ones at H=0 and characterized by singlet-triplet mixed Copper pairs with broken time-reversal symmetry in a vortex phase, is discussed.Comment: 10 pages, 1 figures, Phys. Rev. Lett., submitted (July 25 2005

Non-Pauli Transitions From Spacetime Noncommutativity

There are good reasons to suspect that spacetime at Planck scales is noncommutative. Typically this noncommutativity is controlled by fixed "vectors" or "tensors" with numerical entries. For the Moyal spacetime, it is the antisymmetric matrix $\theta_{\mu\nu}$. In approaches enforcing Poincar\'e invariance, these deform or twist the method of (anti-)symmetrization of identical particle state vectors. We argue that the earth's rotation and movements in the cosmos are "sudden" events to Pauli-forbidden processes. They induce (twisted) bosonic components in state vectors of identical spinorial particles in the presence of a twist. These components induce non-Pauli transitions. From known limits on such transitions, we infer that the energy scale for noncommutativity is $\gtrsim 10^{24}\textrm{TeV}$. This suggests a new energy scale beyond Planck scale.Comment: 11 pages, 1 table, Slightly revised for clarity